By sequencing the genome of the endangered Southern Corroboree frog, we could save it

Ever since I first learned about the devastating disease killing frogs worldwide, I knew I wanted to be part of the solution.
In the 1980s, mysterious die-offs started occurring in frogs in Australia and the Americas. During this time, hundreds of frogs were found dead or reported missing.
and moved up and down the east coast.
Then, in 1998, during her Ph.D. studies, Associate Professor Lee Berger , found to be responsible for the mass deaths of many frog species in Australia and worldwide.
Since then, the fungus has decimated populations of a tiny black and yellow Australian frog.
The Southern Corroboree Frog (Pseudophryne corroboree; ) is now classed as functionally extinct, meaning it can no longer survive without support in the wild, only in zoos.
But with our latest study, we hope we now have the genetic tools to help the Corroboree Frog overcome the fungus and return to its habitat in the Snowy Mountains.
After nearly 10 years of work, our research team has produced —the genetic blueprint—of the Southern Corroboree Frog.
Understanding its genetics will help our team develop innovative breeding strategies to support its survival.

Blueprint to fight infection
Despite their small size, Corroboree Frogs have remarkably large genomes, nearly three times the size of the human genome. , the Corroboree Frog genome is nearly 9 billion base pairs or 9 gigabases, where ours is around 3.1 gigabases.
Interestingly, Corroboree Frogs have only 12 pairs of chromosomes compared to our 23, meaning their chromosomes are exceptionally large, with the biggest being five times the size of the largest human chromosome.
This makes it one of the largest genomes of any Australian frog and significantly larger than many other species of Australian ground frogs.
Amphibian genomes are , but the reasons behind why they are so large remain unclear.
We also found that more than 80% of its genome is made up of non-coding DNA—genetic material that doesn't directly code for proteins, and we aim to explore what this might mean for the species, and for other amphibians.
A decade in planning
Sequencing the Corroboree Frog genome was an international effort nearly a decade in the making. It began when I first reached out to researchers at the Vertebrate Genomes Project at Rockefeller University (U.S.) to explore the possibility of sequencing the genome.
After extensive discussions about funding, selecting the right DNA-donor frog from Melbourne Zoo's conservation breeding program and navigating logistical challenges to transport the invaluable samples to the U.S., sequencing finally commenced in early 2021.
Seeing the first assembled genome data was an incredible moment for me—after years of effort, we finally had a complete genetic blueprint of this iconic species.
This project is a testament to the power of collaboration, persistence and scientific innovation.
Thanks to our amazing team, we achieved a high-quality genome, assembled with exceptional completeness, down to piecing together the DNA sequences into their full chromosomes—the thread-like structures that house the DNA in the cell.
Now, , in collaboration with Melbourne Zoo, and , is using this genome to investigate how and why individual frogs and populations respond differently to infection.
Targeted breeding for Corroboree Frog survival
The genome will allow us to understand down to the gene level which factors increase or decrease susceptibility to the chytrid disease. This will help us to develop approaches to increase the frequency of potential genes that may boost the immune system to fight it.
Our goal is to for increased disease resistance, giving them a fighting chance to persist in the wild once again.
Beyond Corroboree Frog conservation, this genome is also an incredible resource for studying amphibian genetics more broadly.
As part of the , an international initiative dedicated to advancing amphibian genomics, researchers will use this data to resistance, climate adaptation and evolutionary history.
These insights could help inform conservation strategies for other frogs threatened by chytridiomycosis and other environmental challenges by enabling the identification of genes that impact resilience to major threats.
We also plan to compare the Corroboree Frog genome with those of other amphibians to uncover broader patterns of resilience.
Our ultimate goal is to translate these findings into real-world conservation action, helping to secure a future for this remarkable species in the wild.
Provided by University of Melbourne