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May 12, 2025

High-speed imaging captures mechanics of hormone-driven gene activation

How estrogen receptor binds DNA. This illustration shows the estrogen receptor alpha (ERα, in orange) attaching to DNA (in blue) as a pair, or dimer. The image is based on real-time, high-speed atomic force microscopy (HS-AFM) data, showing how ERα recognizes and binds specific DNA sequences to activate genes. The close-up highlights the dimer sitting on the DNA strand—a key step in hormone-driven gene regulation. Credit: Richard Wong
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How estrogen receptor binds DNA. This illustration shows the estrogen receptor alpha (ERα, in orange) attaching to DNA (in blue) as a pair, or dimer. The image is based on real-time, high-speed atomic force microscopy (HS-AFM) data, showing how ERα recognizes and binds specific DNA sequences to activate genes. The close-up highlights the dimer sitting on the DNA strand—a key step in hormone-driven gene regulation. Credit: Richard Wong

Scientists at Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, have captured real-time footage showing how a key hormone receptor activates genes, offering a clearer view of one of the most fundamental processes in biology.

Using high-speed (HS-AFM), Richard Wong and colleagues at Kanazawa University directly visualized how the (ERα) binds to DNA and switches on genes in response to the hormone estrogen.

Their findings, in ACS Nano, reveal new molecular details of hormone signaling, with important implications for diseases like breast cancer.

Real-time visualization of ERα binding to DNA using HS-AFM. Credit: ACS Nano (2025). DOI: 10.1021/acsnano.4c14943

Estrogen receptors play a critical role in controlling gene activity in many tissues. When estrogen binds to ERα, the protein changes shape, forms a dimer (a molecular pair), and attaches to specific regions of DNA called estrogen response elements (EREs).

Although the importance of this process has been known for decades, it had never before been observed unfolding at the in real time.

To capture this, the researchers used HS-AFM to scan individual ERα molecules interacting with DNA. They compared the behavior of ERα with and without estrogen present. Their experiments showed that ERα could bind to DNA without estrogen but did so less precisely and less stably. When estrogen was present, ERα molecules dimerized more efficiently and exhibited targeted, stable binding to ERE sequences.

ERα repeatedly contacted DNA to search for the location of ERE. Credit: ACS Nano (2025). DOI: 10.1021/acsnano.4c14943

"Our study shows that estrogen acts like a molecular matchmaker," says Wong. "It not only triggers ERα to find the right DNA sequence but also stabilizes its grip, ensuring accurate gene activation."

Based on these observations, the team proposed a new "ligand-induced dimerization" (LID) model explaining how hormones fine-tune the dynamic behavior of receptors at the DNA level.

This work provides direct visual evidence of how molecular signals from hormones lead to precise gene control—a fundamental advance that could guide new strategies for treating hormone-driven diseases.

More information: Goro Nishide et al, Zooming into Gene Activation: Estrogen Receptor α Dimerization and DNA Binding Visualized by High-Speed Atomic Force Microscopy, ACS Nano (2025).

Journal information: ACS Nano

Provided by Kanazawa University

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High-speed atomic force microscopy has directly visualized estrogen receptor alpha (ERα) binding to DNA at the single-molecule level. Estrogen promotes ERα dimerization and stable, targeted binding to estrogen response elements, supporting a ligand-induced dimerization model for precise gene activation. These findings clarify hormone-driven gene regulation mechanisms relevant to disease.

This summary was automatically generated using LLM.