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Fungal resistance in wheat: Preserving biodiversity for food security

Fungal resistance in wheat: preserving biodiversity for food security
Yellow rust is a fungal disease and a significant threat to the worldwide wheat production. Yellow stripes on the wheat leaves are typical of an infestation. Credit: Katharina Jung, University of Zurich

Wheat production is threatened by a major fungal disease: yellow rust. Researchers at the University of Zurich have found traditional wheat varieties from Asia that harbor several resistance-conferring genes. They may serve as a durable source of yellow rust resistance in commercial varieties in the future, highlighting the importance of genetic diversity for food security.

Yellow , also known as stripe rust, is caused by a fungal pathogen named Puccinia striiformis f. sp. tritici. The plant disease affects around 88% of global bread wheat production and is one of the most devastating threats to wheat yields. New strategies against the fungus are therefore urgently needed.

An international team headed by researchers at the University of Zurich (UZH) has now discovered two genomic regions in traditional wheat varieties from Asia which confer to the disease.

"If such genes can be transferred to commercial wheat varieties, they could be important in combating yellow rust," says Kentaro Shimizu, professor at the UZH Department of Evolutionary Biology and Environmental Studies, who is responsible for a new study on the subject.

The study has been published in Theoretical and Applied Genetics.

Genetic diversity of local wheat varieties

For decades, targeted breeding of wheat focused on developing high-yielding varieties. While these modern varieties helped feed the world, their limited genetic diversity led to increased vulnerability to threats such as pests, diseases and extreme climates.

In contrast to modern varieties, traditional wheat varieties have been maintained by local farmers in different regions of the world and are therefore less impacted by the loss of genetic diversity. Traditional varieties from Asia appeared particularly promising, for they have been underexplored despite being a potential reservoir of genetic diversity with higher disease resistance.

During her Ph.D. in Shimizu's team, Katharina Jung conducted research on wheat yellow rust resistance in collaboration with the International Maize and Wheat Improvement Center (CIMMYT) in Mexico and the Kyoto University in Japan. Jung screened both traditional and modern varieties from Japan, China, Nepal and Pakistan.

First, she identified yellow rust-resistant wheat plants in large-scale field experiments in Reckenholz, Switzerland, and at CIMMYT, Mexico. Then, she located genomic regions that contribute to yellow rust resistance, so-called quantitative trait loci.

Fungal resistance in wheat: preserving biodiversity for food security
If it were possible to utilize the resistance genes from local Asian varieties in breeding modern wheat varieties, crop losses could be reduced in the future. Credit: Katharina Jung, University of Zurich

Targeted search for novel yellow rust resistances

Jung uncovered two potentially new genomic regions related to yellow rust resistance: One is specific to a traditional variety from Nepal, while the other is more broadly distributed across traditional varieties from Nepal, Pakistan, and China in the southern Himalayan area.

"Interestingly, the southern Himalayan area is believed to be the origin of the yellow rust pathogen itself. Taken together with our findings, we hypothesize that traditional varieties from this area might harbor unique and stable resistances to yellow rust," says Jung.

A more targeted search for novel yellow rust resistances from this area could potentially provide long-lasting protection against a wide range of pathogen strains.

Fungal resistance in wheat: preserving biodiversity for food security
Several wheat varieties with differently shaped ears. Credit: César Rodríguez, Mexico

Safeguarding local varieties and farming practices

The new results underscore the importance of conserving genetic diversity and traditional varieties in wheat to combat diseases and other threats. Farmers have cultivated and maintained these traditional varieties in different parts of the world for generations, which is of great value for future food security.

"Traditional varieties must be preserved both in gene banks and in farmers' fields before they are lost forever. Their use and benefit-sharing should be done in close collaboration with local communities, as their knowledge and practice have paved the way to the genetic diversity we observe today," says Jung.

The varieties provided by Kyoto University were essential for this project. "I cannot emphasize enough how valuable such a collaboration is in making scientific progress," says Shimizu.

More information: Unveiling yellow rust resistance in the near‐Himalayan region: insights from a nested association mapping study, Theoretical and Applied Genetics (2025).

Provided by University of Zurich

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New study identifies wheat varieties that resist the destructive stripe rust disease

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