The residue FY changes between holo- and acyl-ACPs, and the changes are marked on ACP structure (PDB ID: 2FAD). Credit: Journal of the American Chemical Society (2025). DOI: 10.1021/jacs.5c03426

Acyl carrier protein (ACP) plays a central role in fatty acid biosynthesis, acting as a molecular "shuttle" that carries, protects, and delivers elongating acyl chains to various enzymatic partners. However, the high flexibility of ACP and the instability of its thioester鈥恖inked intermediates have long hindered detailed structural characterization of its dynamic behavior.

In a study published in the , a team led by Prof. Wang Fangjun from the Dalian Institute of Chemical 麻豆淫院ics of the Chinese Academy of Sciences revealed how ACP adapts its conformation to accommodate acyl chains of varying lengths (C4-C18), and revealed acyl chain length-dependent conformational dynamics of ACP at the .

Researchers used native mass spectrometry (nMS) to selectively isolate and enrich chemically unstable acyl鈥怉CP intermediates in an ion trap, followed by 193 nm ultraviolet photodissociation (UVPD) to probe their conformational dynamics.

They discovered a striking acyl chain length-dependent rearrangement: Shorter acyl chains (C4-C10) reside in a primary hydrophobic subpocket (Subpocket I), while longer chains (C10-C18) bend and extend into a second subpocket (Subpocket II).

Structural analysis identified Phe50 and Ile62 as critical "gates" that modulate the hydrophobic cavity's dimensions. In addition, Loop I and the Thr64-Gln66 segment were shown to play essential roles in stabilizing longer chains (C12-C18) intermediates.

"Our study provides molecular鈥恖evel insight into how ACP adapts to acyl chains of different lengths," said Prof. Wang. "The findings set the stage for the rational redesign of ACP to enhance the biosynthesis of target , particularly medium鈥恈hain species (C8-C12) with high industrial value."

More information: Yuanzhi Xie et al, Ultraviolet Photodissociation Mass Spectrometry Captures the Acyl Chain Length-Dependent Conformation Dynamics of Acyl Carrier Protein, Journal of the American Chemical Society (2025).

Journal information: Journal of the American Chemical Society