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Genetic isolation despite geographic proximity highlights threat to island fish species

Genetic isolation despite geographic proximity highlights the threat to island fish species
Luciogobius ryukyuensis in a freshwater stream on Okinawa Island. Credit: Ken Maeda

Amphidromous fish—which migrate between freshwater streams and the sea—can move between habitats thanks to ocean currents. Since island streams are generally small and vulnerable to human impact, understanding how exactly fish populations are connected between streams and between islands is important for the conservation of geographically isolated species.

In a study now in Scientific Reports, a team of researchers from the Okinawa Institute of Science and Technology (OIST) and collaborators sought to understand these dynamics by investigating the genetic connectivity among populations of the amphidromous goby Luciogobius ryukyuensis at four in the Ryukyu Archipelago in Japan: Okinawa, Kume, Ishigaki, and Iriomote.

The researchers found that the populations are all genetically distinguishable, suggesting that larvae very rarely travel between the islands, despite relative physical proximity: Iriomote and Ishigaki share the same lagoon, and the populations are just 23km apart.

Genetic isolation despite geographic proximity highlights threat to island fish species
Habitat of Luciogobius ryukyuensis in Urachi River on Kume Island (28 April 2018). The area of the streambed in the photograph showed the entire adult habitat of this species in this stream. The house (police station) in the upper left is blurred for privacy. Credit: Scientific Reports (2025). DOI: 10.1038/s41598-025-09050-7

Mitochondrial genome analysis suggested that the two clades—Okinawa and Kume, and Ishigaki and Iriomote—diverged approximately 900,000 years ago, and that there may have been a larval exchange between the two neighboring islands until more recently.

Their findings highlight the challenges faced by amphidromous fish species in island ecosystems. In particular, the study shows the urgent need for increased targeting the highly vulnerable habitats of the goby, which are especially exposed on the smaller Kume, Ishigaki and Iriomote islands. For example, adult gobies have only been found in a 10m² portion of the Urachi River on Kume Island. This habitat is surrounded by urban structures, and the upper watershed is developed for agriculture.

Protecting and maintaining all existing habitats is critical for the conservation of the whole genetic diversity of this species.

More information: Ken Maeda et al, Genetic isolation of an amphidromous goby species, Luciogobius ryukyuensis, highlights limited gene flow in small island populations, Scientific Reports (2025).

Journal information: Scientific Reports

Citation: Genetic isolation despite geographic proximity highlights threat to island fish species (2025, July 16) retrieved 2 August 2025 from /news/2025-07-genetic-isolation-geographic-proximity-highlights.html
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