Âé¶¹ÒùÔº


Parallel microdevice with AI-powered single-cell analysis enables rapid, high-throughput delivery

3 million cells per minute: parallel microdevice with AI-powered single-cell analysis
Top row (delivery and imaging). Cells and cargo are introduced into a microfluidic chip whose base integrates a porous SU‑8 membrane with vertical through‑holes and a PDMS chamber. Bottom row (automated single‑cell analysis). Credit: Toyohashi University of Technology. All rights reserved.

Many applications—from drug discovery and diagnostics to cell engineering and gene modulation—require delivering biomolecules into large numbers of cells and rapidly evaluating the outcomes. The challenge is two-fold: achieve intracellular delivery at scale across diverse cells and cargoes, and obtain quantitative results fast enough to keep pace with that delivery.

Researchers at the Indian Institute of Technology (IIT) Madras and Toyohashi University of Technology (TUT) have developed an integrated platform that advances both fronts simultaneously. The work is in the journal Advanced Healthcare Materials.

The platform combines two modules: a massively parallel through‑hole cell‑squeezing mechanoporation device for high‑throughput intracellular delivery, and an automated single‑cell image‑cytometry pipeline built on Mask R‑CNN.

The device guides cells through an array of up to 62,000 tiny through‑holes that are narrower than the cell diameter. A brief, gentle squeeze creates transient membrane pores that admit biomolecules into the cell interior, then reseal, allowing cells to recover.

In validation studies, the team delivered gene‑silencing RNA (siRNA) and plasmid DNA across multiple , including human gingival fibroblasts (hGFs), demonstrating broad utility for and personalized therapies.

To keep up with the fast delivery, an automated analysis system uses the same microscope images labs already acquire. A deep‑learning model looks at those images and, in a single pass, reports four readouts: , the fraction of cargo‑positive cells, the fraction of viable cells, and per‑cell fluorescence intensity.

3 million cells per minute: parallel microdevice with AI-powered single-cell analysis
a) 6‑FAM siRNA; b) EGFP plasmid. c) Summary bars of delivery efficiency (green‑positive fraction) and cell viability (Calcein‑positive fraction), reported as mean ± SD across fields/replicates. d) Single‑cell scatter plots linking signal to state. Credit: Toyohashi University of Technology.

What used to take hours of manual counting now takes about 83 seconds on a representative dataset of roughly 500 cells, with accuracy comparable to human review.

Large cohorts were processed—for example, 1,980 cells (6‑FAM siRNA) and 1,184 (EGFP plasmid). These sample sizes make the results statistically robust and turn high‑throughput delivery into high‑confidence decisions.

"Our goal was simple: get molecules inside many cells quickly and gently," says first author Pulasta Chakrabarty. "Seeing the device work across different cell types points to real potential in cell engineering and personalized therapies."

Co‑author Ryoma Suzuki adds, "The automated model looks at the same images labs already use. It does the counting and measuring—cell size, delivery efficiency, viability, and per‑cell fluorescence—in one pass, so the evaluation keeps pace with the experiments."

"High throughput alone isn't enough," notes Prof. Moeto Nagai. "What matters is the speed at which results can be trusted. By unifying high‑throughput delivery with automated , we move from proofs‑of‑concept to practical workflows—and closer to systems that prepare a patient's cells on‑site."

By coupling scalable intracellular with rapid, automated evaluation, the platform expands what can be accomplished in a single day—from large‑scale screening and diagnostics to practical cell manipulation and future point‑of‑care gene‑editing workflows.

More information: Pulasta Chakrabarty et al, High Throughput Intracellular Delivery Using a 2D Cellâ€Squeezing Mechanoporation Device and Its Analysis by a Deep Learning Model, Advanced Healthcare Materials (2025).

Journal information: Advanced Healthcare Materials

Citation: Parallel microdevice with AI-powered single-cell analysis enables rapid, high-throughput delivery (2025, September 27) retrieved 1 October 2025 from /news/2025-09-parallel-microdevice-ai-powered-cell.html
This document is subject to copyright. Apart from any fair dealing for the purpose of private study or research, no part may be reproduced without the written permission. The content is provided for information purposes only.

Explore further

Gene delivery system uses nanostraws and electrical pulses to engineer cancer-fighting immune cells

0 shares

Feedback to editors