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High-speed microscopy reveals real-time protein translocation across a bacterial membrane

Breakthrough observation of real-time protein translocation by SecYEG-SecA complex
These images captured using high-speed atomic force microscopy, represent the snapshots of the protein substrate getting translocated through the SecYEG-SecA complex. The left image indicates the binding/translocating of the protein substrate to the SecYEG-SecA complex. The right image indicates the extension of the translocated protein substrate from the SecYEG-SecA complex. Credit: Tomoya Tsukazaki

Protein translocation is an essential, nano-scale dynamic process that facilitates the movement of proteins across cellular membranes, enabling them to reach specific locations within the cell or to be transported outside the cell. This process occurs through membrane protein complexes that provide necessary channels for the movement of proteins.

In bacteria, a group of proteins forms the SecYEG-SecA complex, which helps cellular proteins translocate across the cytoplasmic membrane. The SecYEG component is a channel through which SecA drives protein translocation, using energy from a molecule called (ATP), also known as the "energy currency" of the cell. Despite many different approaches, observing this process in detail has been quite challenging.

For the first time ever, researchers from Japan directly visualized protein translocation across membranes using high-speed (HS-AFM)—an event that had been biochemically predicted but never observed. This pioneering study, published online in on January 8, 2025, was led by Professor Tomoya Tsukazaki from the Nara Institute of Science and Technology (NAIST).

The team, including Ms. Yui Kanaoka and Dr. Takayuki Uchihashi from Nagoya University and Dr. Takaharu Mori from Tokyo University of Science; successfully visualized how the SecYEG-SecA complex helps mediate the translocation of unfolded proteins across the bacterial membrane at a molecular level.

Real-time dynamics of protein translocation across bacterial membrane using high-speed atomic force microscopy (HS-AFM). This visualization reveals how the SecYEG-SecA complex facilitates protein movement, showcasing the crucial conformational changes in SecA that drive translocation. Credit: Tomoya Tsukazaki

The researchers specifically focused on the in SecA during the ATP hydrolysis cycle, which is critical to the translocation mechanism. The hydrolysis of ATP serves as the energy source that drives protein transport.

By analyzing the SecYEG-SecA complex dynamics using HS-AFM, the team captured real-time snapshots of SecA transitioning between two distinct conformational states due to the alteration of a region of SecA, PPXD—referred to as the "High" and "Low" states. These changes were linked to the ATP hydrolysis cycle.

"Thirteen years ago, we embarked on this journey to visualize protein translocation across membranes. The challenge of achieving the necessary spatiotemporal resolution pushed the very limits of high-speed AFM. Yet, through relentless dedication, meticulous sample preparation, and patient observation, we are thrilled to have captured these truly groundbreaking images," says Tsukazaki.

Detailed analyses also estimated the rate of protein translocation to be about 2.2 per second, and a single SecYEG-SecA complex was sufficient for successful protein translocation.

"We not only succeeded in capturing the protein membrane translocation process in real-time—an event previously elusive to visual observation—but also estimated the structural changes of motor proteins and their transport speeds, marking a significant breakthrough. Moving forward, we plan to apply this method to analyze other membrane proteins. This study paves the way for future research in visualizing these dynamics, potentially leading to better comprehension of the molecular mechanisms behind protein translocation," concludes Tsukazaki.

More information: Yui Kanaoka et al, AFM observation of protein translocation mediated by one unit of SecYEG-SecA complex, Nature Communications (2025).

Journal information: Nature Communications

Citation: High-speed microscopy reveals real-time protein translocation across a bacterial membrane (2025, February 18) retrieved 23 September 2025 from /news/2025-02-high-microscopy-reveals-real-protein.html
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