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SP11 molecule reverses mitochondrial fragmentation, restoring energy production in stressed cells

Researchers find a potential treatment for mitochondrial damage that causes disease
Top: A protein called Drp1 (blue) prompts the cell’s power plants, mitochondria (tan), to divide. Drp1 normally acts through a go-between protein called Mff (green). Bottom: But when exposure to oxidizing chemicals stresses mitochondria, another go-between protein, Fis1 (pink) hijacks the division process, squeezing mitochondria into unequal parts. Those parts fracture into smaller and smaller fragments until they can’t produce enough energy to keep the cell healthy. The damage spreads from cell to cell and causes a variety of human ailments, including Parkinson’s and heart disease. Credit: Nature Communications (2025). DOI: 10.1038/s41467-025-59434-6

Mitochondria turn the food we eat into the energy our cells can use. But when stress hijacks the process they use to maintain their quality, they get snipped into useless fragments and go into a tailspin that spreads from cell to cell and triggers a wide range of human diseases. As researchers learn more about the health impacts of rogue mitochondria, they've been searching for ways to prevent or treat them.

Now researchers at the Department of Energy's SLAC National Accelerator Laboratory and Stanford University say they've found a way to protect mitochondria from stress induced by exposure to a highly reactive molecule called hydrogen peroxide.

This particular type of damage is linked to neurodegenerative diseases such as Parkinson's and Amyotrophic Lateral Sclerosis (ALS), heart disease, diabetes, inflammatory bowel disease and cancer, among others.

In experiments with human kidney cells, the research team reported, adding a small molecule called SP11 to the fragmented mitochondria made them hale and whole again.

The team described their work in a published in Nature Communications, and Stanford has patented SP11 as a potential candidate for .

"If we can keep mitochondria in pristine shape, we may really help address many chronic human diseases. That's why we embarked on this project," said Stanford Professor Daria Mochly-Rosen, a senior author of the report whose research into the chemistry of proteins has yielded both potential and successfully deployed drugs.

Not just a power plant

Although mitochondria are best known for producing energy, that's not their only role. "They're so busy! This organelle is so critical," Mochly-Rosen said. For instance, they're responsible for constructing some of the cell's molecular building blocks and for deliberately killing cells whose DNA is damaged.

For a long time, scientists assumed that mitochondria were confined to their host cells, but they recently discovered this isn't true. "Now we know they can exit one cell and enter another one," Mochly-Rosen said. "When bad mitochondria do this to a healthy cell, they can kill it. When healthy mitochondria do it to a sick cell, they can help it heal."

Seventeen years ago, Mochly-Rosen and her colleagues trained a microscope on cells from a rat with and discovered that the mitochondria were fragmented into small pieces. This set off a quest to find out what was happening and how to prevent or fix it.

Hijacking fission

Mitochondria are often depicted as little jellybeans whose shape never changes, said Suman Pokhrel, who was a Ph.D. student at SLAC and Stanford at the time he led the study. But in real life they form an ever-changing, fibril-like network. Thousands of them surround the nucleus of each cell, and they're constantly dividing and fusing with each other. Mitochondria need to maintain a balance between division and fusion to stay healthy, increase their numbers and make enough energy.

In healthy mitochondria, a protein called Drp1 attaches to the mitochondrial membrane and initiates division via a go-between protein called Mff. But when mitochondria send out distress signals—for instance, if they've been attacked by a reactive oxygen molecule like hydrogen peroxide and can't repair the damage fast enough—Drp1 attaches to a protein called Fis1 and uses it as a go-between instead.

Fis1 directs mitochondrial fission in yeast, but in humans it only brings grief. It hijacks the normal process mitochondria use to divide neatly in half and instead squeezes them into uneven pieces that fragment into even smaller ones that don't produce enough energy.

First, one of Fis1's six squiggly components, or helices, unwinds and moves away a bit. When that happens, a single site in Fis1 called Cys41 is exposed. It's a type of amino acid, cysteine, that can sense oxidative cell damage, and thus a potential target for drugs.

These exposed Cys41 sites then link pairs of Fis1 molecules together, and this paired configuration allows them to grab Drp1 and begin the abnormal fission process that leaves mitochondria in fragments.

If a drug could be found that attaches to Cys41 and keeps the Fis1 molecules from forming pairs, it could prevent stress-induced mitochondrial fragmentation, Wakatsuki said.

The team screened 6,000 molecules to find one that would fit the Cys41 site and found a match: SP11. When they added SP11 to cultured whose mitochondria had been fragmented by exposure to , the returned to normal.

In their report, the research team noted that SP11 includes a compound called phenothiazine that's connected to a chemical "warhead"—a bit that can fit into a molecular pocket and engage with Cys41.

Several phenothiazine-based drugs are approved by the Food and Drug Administration as treatments for nausea, vomiting, allergies and neurological conditions, they added, so it's likely that SP11 also has good drug-like properties. As with all medications, it would take much more research and development to tailor SP11 for safely treating specific health conditions.

More information: Suman Pokhrel et al, A hidden cysteine in Fis1 targeted to prevent excessive mitochondrial fission and dysfunction under oxidative stress, Nature Communications (2025).

Journal information: Nature Communications

Citation: SP11 molecule reverses mitochondrial fragmentation, restoring energy production in stressed cells (2025, May 22) retrieved 22 May 2025 from /news/2025-05-sp11-molecule-reverses-mitochondrial-fragmentation.html
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