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Macrophages can use microautophagy to clear damaged mitochondria, bypassing traditional pathways

Macrophages swallow damaged mitochondria through microautophagy
Diagram of macroautophagy and microautophagy. Credit: Nature Communications (2025). DOI: 10.1038/s41467-025-63531-x

Macrophages are part of the immune system's frontline; they attack and "eat" invaders to protect surrounding cells. They, along with other cells, maintain intracellular conditions through macroautophagy, using autophagosomes to help digest broken cell components.

The discovery of its molecular mechanism led researcher Dr. Yoshinori Ohsumi to be awarded the Nobel Prize. However, new findings show that internal recycling can take place through a different method entirely, bypassing the macroautophagy process.

Researchers from the University of Osaka have revealed that macrophages can directly engulf and digest damaged and other organelles using a process called microautophagy. Unlike traditional recycling pathways, which can be complex, this shortcut allows lysosome-like compartments inside macrophages to take in broken cell components directly.

The article, "," has been published in Nature Communications.

"Macroautophagy has been extensively studied, but microautophagy is not understood as extensively," says lead author, Shiou-Ling Lu.

"We found that this process seems to play a more prominent role than macroautophagy, at least in mitochondria degradation in macrophage due to its lower energy demand."

To do this, the researchers examined lysosome-related organelles, which share traits with lysosomes, membrane-bound organelles which contain enzymes to break down other cells. These lysosome-related organelles were present in macrophages exposed to a mitochondria-damaging chemical.

They found that the damaged mitochondria could be directly engulfed by these lysosome-like organelles, independent of macroautophagy pathways, bypassing the need to digest broken cell components first.

Proteins and lipids such as Rab32 GTPase, phosphatidylinositol 3,5-bisphosphates, ubiquitin, and p62/SQSTM1 were found to be crucial for regulating this type of degradation. These proteins and lipids have their own roles in the process, including prompting the beginnings of ubiquitination, and ensuring that certain damaged components are engulfed.

Macrophages swallow damaged mitochondria through microautophagy
Sequential images showing mitochondria being sequestered into lysosome-related organelles via microautophagy. Credit: Nature Communications (2025). DOI: 10.1038/s41467-025-63531-x

"Our findings reveal that macrophages have an underappreciated way to recycle their own damaged parts, and this process directly shapes how they function," says senior author, Takeshi Noda.

This mitochondrial cleanup is more than housekeeping; by removing damaged mitochondria, macrophages rewire their metabolism toward glycolysis, which fuels a shift into the M1 state: an activated, inflammation-ready mode critical for fighting infection.

When researchers knocked out Rab32/38, lost much of this ability, showing how central microautophagy is to their immune regulation.

This study highlights the diverse and versatile degradation systems that work together to coordinate cellular physiology, influencing immune system function. The team suggests that further research would be beneficial for the field to understand how this process of microautophagy is incorporated into other .

More information: Shiou-Ling Lu et al, Evidence that mitochondria in macrophages are destroyed by microautophagy, Nature Communications (2025).

Journal information: Nature Communications

Provided by University of Osaka

Citation: Macrophages can use microautophagy to clear damaged mitochondria, bypassing traditional pathways (2025, September 2) retrieved 2 September 2025 from /news/2025-09-macrophages-microautophagy-mitochondria-bypassing-traditional.html
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