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Citizen science game advances global protein database

Researchers advance global protein databases through citizen science game
Comparison of the original PDB model (left) of yeast mitochondrial import inner membrane translocase subunit TIM44p (PDB entry 2fxt; Josyula et al., 2006) with the Foldit model after PDB-REDO (right). Top: in the overall structure a clear change is visible, notably in the distribution of β-strands. The number of β-strand/β-bridge residues increases from 48 to 56. Bottom: rearrangement of a surface loop causes a register shift. At the position marked with a star there was originally an Asp residue, whereas in the updated model there is the fully conserved Gly388 residue. Models are shown with their corresponding 2mFo − DFc map contoured at 1.1σ. This figure was made with CCP4mg (McNicholas et al., 2011). Credit: Acta Crystallographica Section D Structural Biology (2025). DOI: 10.1107/s2059798325008149

In a groundbreaking new study, researchers led by the University of Massachusetts Dartmouth have shown that players of the can successfully refine and improve previously solved protein structures—enhancing the accuracy of data housed in the Protein Data Bank (PDB), one of the world's most important scientific resources. The paper is in the journal Acta Crystallographica Section D Structural Biology.

Foldit is a global research collaboration that turns protein modeling into an interactive puzzle game, allowing players from around the world to contribute directly to cutting-edge biochemistry research. Earlier Foldit studies demonstrated that players could outperform both expert scientists and automated in predicting protein structures.

This latest paper, led by Associate Professor Firas Khatib (Computer and Information Science), analyzes how players improved existing models through a series of Foldit Reconstruction puzzles—tasks based on real protein structures already solved by X-ray crystallography or cryo- and stored in the PDB.

"Science is built on shared discovery," said Khatib, who has been part of the Foldit project since its inception in 2008. "Scientists across disciplines use the Protein Data Bank to guide experiments and develop new technologies. Even small errors in its models can lead to incorrect assumptions down the road. What's exciting is that Foldit players have shown they can proactively improve these structures—strengthening the foundation for future research."

The study found that top Foldit solutions were substantial improvements over the original models. In most cases, players enhanced the geometry and reduced steric clashes, and in some instances, improved the fit to .

The study's supplemental materials also include insights from top Foldit players, who describe their diverse strategies for tackling these puzzles. Notably, two players achieved better results than the original expert models using fully automated methods—scripts, or "recipes," written within Foldit that required no manual human input.

"What's particularly impressive," added Khatib, "is that these automated player-created algorithms improved upon professional results. It shows the creativity and innovation that emerge when you invite the public to participate in real science."

More information: Andreas C. Petrides et al, Reconstructing biological molecules with help from video gamers, Acta Crystallographica Section D Structural Biology (2025).

Citation: Citizen science game advances global protein database (2025, October 15) retrieved 18 October 2025 from /news/2025-10-citizen-science-game-advances-global.html
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